3D Printed Modular Hexagon: The Ultimate Pen Organizer & Multipurpose Container
Modern workspaces demands for tools that are not only functional but also adaptable, customizable, and visually appealing. Whether you’re working in an office, running a home studio, or simply trying to keep your desk tidy, the need for organization is universal.
One design that checks all these boxes is the 3D printed modular hexagon organizer—a clever, space-saving system that takes its inspiration from nature’s most efficient shape: the hexagon. More than just a pen holder, this modular design is a versatile solution for storing a wide range of items while allowing you to expand, rearrange, and style it however you want.
What is a Modular Hexagon Organizer?
A modular hexagon organizer consists of hexagon-shaped compartments that can be arranged like honeycomb cells. Each unit is printed individually, and the modules connect through built-in clips, magnets, or interlocking grooves.
The magic lies in the geometry. Hexagons are naturally space-efficient—they tessellate without gaps, unlike circles or irregular shapes. This makes them perfect for modular storage: you can keep adding pieces in any direction without wasting surface area.
This approach offers several practical advantages:
- Expandable design – Start small and add more modules over time.
- Repairable and replaceable – If one module breaks, reprint just that piece.
- Custom layouts – Arrange the modules horizontally on your desk or vertically as a wall-mounted grid.


Why Choose a 3D Printed Solution Over Store-Bought Organizers?
While you could easily walk into a store and buy a desk organizer, 3D printing offers a level of customization and adaptability that off-the-shelf products can’t match.
1. Complete Personalization
With 3D printing, the organizer is yours from the ground up. You control:
- Height and width of each module
- Shape variations (standard hexagon, tapered, curved edges, etc.)
- Colors that match your workspace aesthetic
- Labels or embossed text for specific compartments
For example, if you have a set of expensive markers that need a snug fit, you can tweak the diameter to the exact millimeter.
2. Scalability & Modularity
Need just two compartments? Print two. Realize later you need more? Print more and snap them in. The modular nature means your organizer can evolve alongside your workflow.
3. Cost Efficiency
A premium desk organizer can cost anywhere from $15 to $50. With 3D printing, even large setups cost just a few dollars in filament—plus your time.
4. Eco-Friendly Approach
Instead of buying a new unit when your needs change, you can reprint, resize, or recycle old modules into new ones, reducing waste.
5. Creative Satisfaction
Beyond utility, there’s a satisfaction in knowing you’ve built something unique for your own workspace—a functional piece of personal design.



Technical Considerations Before Printing
1. Filament Choice
- PLA – Beginner-friendly, prints smoothly, many colors available.
- PETG – More impact-resistant and flexible, ideal for heavier tools.
- Wood-Filled PLA – For a natural look, perfect for eco-themed workspaces.
- Recycled Filament – A sustainable choice that still provides strong prints.
2. Print Settings
- Layer Height: 0.2 mm for good balance between speed and detail.
- Infill: 15–20% for lightweight use, 30–40% for sturdier builds.
- No Supports: Most designs can be printed flat without support material, speeding up the process.
Creative Applications Beyond Pen Storage
While this organizer shines as a pen holder, the possibilities are nearly endless:
- Art Studio Setup – Separate brushes, markers, and blending tools.
- Maker Workshop – Store screws, nuts, bolts, and small hand tools.
- Home Office – Organize stationery, USB drives, and cables.
- Craft Room – Keep beads, threads, and small embellishments sorted.
- Vanity Table – Use for makeup brushes, lipsticks, and skincare products.
- Kitchen Use – Store tea bags, spice jars, or condiment packets.
- Gardening Nook – Hold plant tags, seed packets, and small tools.

Styling & Display Ideas
- Color Coordination
Match the modules to your desk setup or create themed color clusters (e.g., blue for tech tools, green for art supplies). - Gradient Patterns
Print each module in a slightly different shade to create an ombre effect across the layout. - Height Variation
Print different module heights for a tiered, dynamic look. - Wall-Mounted Honeycomb
Save desk space by attaching modules vertically with screws or adhesive strips. - Labeling System
Add embossed text labels or insert printed stickers for easy identification.


Final Thoughts
The 3D printed modular hexagon organizer is a shining example of what’s possible when practical needs meet creative design. It’s more than just a pen holder—it’s a scalable, customizable, and visually appealing storage solution that grows with you.
For hobbyists, it’s a fun weekend print that adds immediate value to your workspace. For professionals, it’s a way to keep tools accessible while presenting a sleek, organized desk. And for educators or parents, it’s an engaging introduction to the benefits of modular design and 3D printing technology.
In an era where personal spaces reflect personal identities, why settle for mass-produced plastic trays when you can create something that’s uniquely yours? With just a few hours of printing and some thoughtful design choices, your desk can have a storage system that’s efficient, eco-friendly, and unmistakably custom-made.


Where to Get the File
We have uploaded the file with a different set of heights for you to download for free. You can get the file through the link below.
https://www.printables.com/model/1387230-3d-printed-modular-hexagon-pen-organizer-multipurp
https://makerworld.com/en/models/1707894-modular-hexagon-multipurpose-container-storage